BioLabs

연구

간행물

2024년 10월
Pavla Bohacova, Marina Terekhova, Petr Tsurinov, Riley Mullins, Kamila Husarcikova, Irina Shchukina, Alina Ulezko Antonova, Barbora Echalar, Jan Kossl, Adam Saidu, Thomas Francis, Chelsea Mannie, Laura Arthur, Stephen D.R. Harridge, Daniel Kreisel, Philip A. Mudd, Angela M. Taylor, Coleen A. McNamara, Marina Cella, Sidharth V. Puram, Theo van den Broek, Femke van Wijk, Pirooz Eghtesady, Maxim N. Artyomov

Multidimensional profiling of human T cells reveals high CD38 expression, marking recent thymic emigrants and age-related naive T cell remodeling

Immunity, 57권, 10호, 페이지 2362-2379.e10

2023년 11월
Marina Terekhova, Amanda Swain, Pavla Bohacova, Ekaterina Aladyeva, Laura Arthur, Anwesha Laha, Denis A. Mogilenko, Samantha Burdess, Vladimir Sukhov, Denis Kleverov, Barbora Echalar, Petr Tsurinov, Roman Chernyatchik, Kamila Husarcikova, Maxim N. Artyomov

Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB−CD8+ memory T cells and accumulation of type 2 memory T cells

Immunity, 56권, 12호, 페이지 2836-2854.e9

년 8월 2021일
Oleg Shpynov , Roman Chernyatchik, Petr Tsurinov, Maxim Artyomov

SPAN 및 JBR: 피크 호출을 위한 분석 및 시각화 툴킷

BCB '21: 생물 정보학, 전산 생물학 및 건강 정보학에 관한 12차 ACM 회의 의회록, 자료 번호: 69, 1페이지

년 8월 2021일
Oleg Shpynov, Kapralov Nikolai

PubTrends: 과학 문헌 탐색기

BCB '21: 생물 정보학, 전산 생물학 및 건강 정보학에 관한 12차 ACM 회의 의회록, 자료 번호: 72, 1페이지

년 8월 2021일
Petr Tsurinov, Oleg Shpynov, Nina Lukashina, Daria Likholetova, Maxim Artyomov

FARM: 계층적 연관 규칙 마이닝 및 시각화 방법

BCB '21: 생물 정보학, 전산 생물학 및 건강 정보학에 관한 12차 ACM 회의 의회록, 자료 번호: 70, 1페이지

5월 2021일
Laura Arthur, Ekaterina Esaulova, Denis A. Mogilenko, Petr Tsurinov, Samantha Burdess, Anwesha Laha, Rachel Presti, Brian Goetz, Mark A. Watson, Charles W. Goss, Christina A. Gurnett, Philip A. Mudd, Courtney Beers, Jane A. O’Halloran & Maxim N. Artyomov

Cellular and plasma proteomic determinants of COVID-19 and non-COVID-19 pulmonary diseases relative to healthy aging

Nature Aging

5월 2021일
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Petr Tsurinov, Maxim N Artyomov

Semi-supervised peak calling with SPAN and JBR Genome Browser

Bioinformatics, btab376

년 20202월 1일
Denis A. Mogilenko, Oleg Shpynov, Prabhakar Sairam Andhey, Laura Arthur, Amanda Swain, Ekaterina Esaulova, Simone Brioschi, Irina Shchukina, Martina Kerndl, Monika Bambouskova, Zhangting Yao, Anwesha Laha, Konstantin Zaitsev, Samantha Burdess, Susan Gillfilan, Sheila A. Stewart, Marco Colonna, Maxim N.Artyomov

Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

Immunity

년 20202월 1일
Anna Nikiforovskaya, Nikolai Kapralov, Anna Vlasova, Oleg Shpynov, Aleksei Shpilman

Automatic generation of reviews of scientific papers

ICMLA2020

2020년 11월
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov

Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome

Nature Aging

5월 2020일

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov

Epigenetic aging of classical monocytes from healthy individuals

bioRxiv 사전 인쇄

2019년 6월
O. Shpynov, A. Dievskii, P. Tsurinov, et al

Bioinformatics Institute 2018/19 project abstracts

Saint-Petersburg, ISBN 978-5-6043094-2-1

2019년
Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich

GENOMIC DATA ACCESS SERVICE

2018년 9월
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov

POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq

17회 계산 생물학 유럽 컨퍼런스 논문집

7월 2018일
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov

POSTER: Semi-supervised solution for peak calling

Biata2018 Bioinformatics 논문집: 알고리즘에서 애플리케이션까지

5월 2018일
Jeremy P. Huynh, Chih-Chung Lin, Jacqueline M. Kimmey, Nicholas N. Jarjour, Elizabeth A. Schwarzkopf, Tara R. Bradstreet, Irina Shchukina, Oleg Shpynov, Casey T. Weaver, Reshma Taneja, Maxim N. Artyomov, Brian T. Edelson, Christina L. Stallings

Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

Journal of Experimental Medicine

2016년 10월
Bagaitkar Juhi, Bambouskova Monica, Oltz Eugene, Porter Sofia, Collins Patrick, Shpynov Oleg, German Demidov, Konstantin Zaytsev

POSTER: Systems Level Characterization of the Epigenomic Changes During Healthy Aging in the Human Blood Monocyte

2014년 11월
Evgenii Kurbatckii

POSTER: Detecting differential histone modification sites from ChIP-seq data via ranking

14회 계산 생물학 유럽 컨퍼런스 논문집

2014년 11월
Sergei Lebedev, Dmitry Groshev

POSTER: A switching hidden Markov model for bisulfite sequencing

14회 계산 생물학 유럽 컨퍼런스 논문집