BioLabs

リサーチ

出版物

2024年10月
Pavla Bohacova, Marina Terekhova, Petr Tsurinov, Riley Mullins, Kamila Husarcikova, Irina Shchukina, Alina Ulezko Antonova, Barbora Echalar, Jan Kossl, Adam Saidu, Thomas Francis, Chelsea Mannie, Laura Arthur, Stephen D.R. Harridge, Daniel Kreisel, Philip A. Mudd, Angela M. Taylor, Coleen A. McNamara, Marina Cella, Sidharth V. Puram, Theo van den Broek, Femke van Wijk, Pirooz Eghtesady, Maxim N. Artyomov

Multidimensional profiling of human T cells reveals high CD38 expression, marking recent thymic emigrants and age-related naive T cell remodeling

「Immunity」第 57 巻、10 号、2362～2379.e10 ページ

November 2023
Marina Terekhova, Amanda Swain, Pavla Bohacova, Ekaterina Aladyeva, Laura Arthur, Anwesha Laha, Denis A. Mogilenko, Samantha Burdess, Vladimir Sukhov, Denis Kleverov, Barbora Echalar, Petr Tsurinov, Roman Chernyatchik, Kamila Husarcikova, Maxim N. Artyomov

Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB−CD8+ memory T cells and accumulation of type 2 memory T cells

「Immunity」第 56 巻、12 号、2836～2854.e9 ページ

年8月2021日
Oleg Shpynov、Roman Chernyatchik、Petr Tsurinov、Maxim Artyomov

SPAN および JBR: ピーク呼び出しの分析および可視化ツールキット

BCB '21: 第 12 回 ACM バイオインフォマティクス、計算生物学、および健康情報学カンファレンス議事録、記事番号 69、ページ 1

年8月2021日
Oleg Shpynov、Kapralov Nikolai

PubTrends: 科学文献探索ツール

BCB '21: 第 12 回 ACM バイオインフォマティクス、計算生物学、および健康情報学カンファレンス議事録、記事番号 72、ページ 1

年8月2021日
Petr Tsurinov、Oleg Shpynov、Nina Lukashina、Daria Likholetova、Maxim Artyomov

FARM: 階層的関連付け規則のマイニングおよび可視化手法

BCB '21: 第 12 回 ACM バイオインフォマティクス、計算生物学、および健康情報学カンファレンス議事録、記事番号 70、ページ 1

5月2021日
Laura Arthur, Ekaterina Esaulova, Denis A. Mogilenko, Petr Tsurinov, Samantha Burdess, Anwesha Laha, Rachel Presti, Brian Goetz, Mark A. Watson, Charles W. Goss, Christina A. Gurnett, Philip A. Mudd, Courtney Beers, Jane A. O’Halloran & Maxim N. Artyomov

Cellular and plasma proteomic determinants of COVID-19 and non-COVID-19 pulmonary diseases relative to healthy aging

Nature Aging

5月2021日
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Petr Tsurinov, Maxim N Artyomov

Semi-supervised peak calling with SPAN and JBR Genome Browser

バイオインフォマティクス、btab376

年20202月1日
Denis A. Mogilenko, Oleg Shpynov, Prabhakar Sairam Andhey, Laura Arthur, Amanda Swain, Ekaterina Esaulova, Simone Brioschi, Irina Shchukina, Martina Kerndl, Monika Bambouskova, Zhangting Yao, Anwesha Laha, Konstantin Zaitsev, Samantha Burdess, Susan Gillfilan, Sheila A. Stewart, Marco Colonna, Maxim N.Artyomov

Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

免疫

年20202月1日
Anna Nikiforovskaya, Nikolai Kapralov, Anna Vlasova, Oleg Shpynov, Aleksei Shpilman

Automatic generation of reviews of scientific papers

ICMLA2020

November 2020
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov

Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome

Nature Aging

5月2020日

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov

Epigenetic aging of classical monocytes from healthy individuals

bioRxiv 原稿

年2019月6日
O. Shpynov, A. Dievskii, P. Tsurinov, et al

Bioinformatics Institute 2018/19 project abstracts

Saint-Petersburg、ISBN 978-5-6043094-2-1

2019
Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich

GENOMIC DATA ACCESS SERVICE

2018年 9月
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov

POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq

第 17 回計算生物学に関する欧州カンファレンスの議事録

7月2018日
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov

POSTER: Semi-supervised solution for peak calling

「BiATA2018 バイオインフォマティクス: アルゴリズムから適用まで」の議事録

5月2018日
Jeremy P. Huynh, Chih-Chung Lin, Jacqueline M. Kimmey, Nicholas N. Jarjour, Elizabeth A. Schwarzkopf, Tara R. Bradstreet, Irina Shchukina, Oleg Shpynov, Casey T. Weaver, Reshma Taneja, Maxim N. Artyomov, Brian T. Edelson, Christina L. Stallings

Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

Journal of Experimental Medicine

2016年10月
Bagaitkar Juhi, Bambouskova Monica, Oltz Eugene, Porter Sofia, Collins Patrick, Shpynov Oleg, German Demidov, Konstantin Zaytsev

POSTER: Systems Level Characterization of the Epigenomic Changes During Healthy Aging in the Human Blood Monocyte

November 2014
Evgenii Kurbatckii

POSTER: Detecting differential histone modification sites from ChIP-seq data via ranking

第 14 回計算生物学に関する欧州カンファレンスの議事録

November 2014
Sergei Lebedev, Dmitry Groshev

POSTER: A switching hidden Markov model for bisulfite sequencing

第 14 回計算生物学に関する欧州カンファレンスの議事録