BioLabs

Investigación

Publicaciones

Octubre de 2024
Pavla Bohacova, Marina Terekhova, Petr Tsurinov, Riley Mullins, Kamila Husarcikova, Irina Shchukina, Alina Ulezko Antonova, Barbora Echalar, Jan Kossl, Adam Saidu, Thomas Francis, Chelsea Mannie, Laura Arthur, Stephen D.R. Harridge, Daniel Kreisel, Philip A. Mudd, Angela M. Taylor, Coleen A. McNamara, Marina Cella, Sidharth V. Puram, Theo van den Broek, Femke van Wijk, Pirooz Eghtesady, Maxim N. Artyomov

Multidimensional profiling of human T cells reveals high CD38 expression, marking recent thymic emigrants and age-related naive T cell remodeling

Immunity, volumen 57, número 10, páginas 2362-2379.e10

November 2023
Marina Terekhova, Amanda Swain, Pavla Bohacova, Ekaterina Aladyeva, Laura Arthur, Anwesha Laha, Denis A. Mogilenko, Samantha Burdess, Vladimir Sukhov, Denis Kleverov, Barbora Echalar, Petr Tsurinov, Roman Chernyatchik, Kamila Husarcikova, Maxim N. Artyomov

Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB−CD8+ memory T cells and accumulation of type 2 memory T cells

Immunity, volumen 56, número 12, páginas 2836-2854.e9

Agosto de 2021
Oleg Shpynov , Roman Chernyatchik, Petr Tsurinov, Maxim Artyomov

SPAN and JBR: analysis and visualization toolkit for peak calling

BCB '21: Actas del 12º Congreso de la ACM sobre Bioinformática, Biología Computacional e Informática de la Salud, artículo n.º 69, 1 página

Agosto de 2021
Oleg Shpynov, Kapralov Nikolai

PubTrends: a scientific literature explorer

BCB '21: Actas del 12º Congreso de la ACM sobre Bioinformática, Biología Computacional e Informática de la Salud, artículo n.º 72, 1 página

Agosto de 2021
Petr Tsurinov, Oleg Shpynov, Nina Lukashina, Daria Likholetova, Maxim Artyomov

FARM: hierarchical association rule mining and visualization method

BCB '21: Actas del 12º Congreso de la ACM sobre Bioinformática, Biología Computacional e Informática de la Salud, artículo n.º 70, 1 página

Mayo de 2021
Laura Arthur, Ekaterina Esaulova, Denis A. Mogilenko, Petr Tsurinov, Samantha Burdess, Anwesha Laha, Rachel Presti, Brian Goetz, Mark A. Watson, Charles W. Goss, Christina A. Gurnett, Philip A. Mudd, Courtney Beers, Jane A. O’Halloran & Maxim N. Artyomov

Cellular and plasma proteomic determinants of COVID-19 and non-COVID-19 pulmonary diseases relative to healthy aging

Nature Aging

Mayo de 2021
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Petr Tsurinov, Maxim N Artyomov

Semi-supervised peak calling with SPAN and JBR Genome Browser

Bioinformatics, btab376

Diciembre de 2020
Denis A. Mogilenko, Oleg Shpynov, Prabhakar Sairam Andhey, Laura Arthur, Amanda Swain, Ekaterina Esaulova, Simone Brioschi, Irina Shchukina, Martina Kerndl, Monika Bambouskova, Zhangting Yao, Anwesha Laha, Konstantin Zaitsev, Samantha Burdess, Susan Gillfilan, Sheila A. Stewart, Marco Colonna, Maxim N.Artyomov

Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

Immunity

Diciembre de 2020
Anna Nikiforovskaya, Nikolai Kapralov, Anna Vlasova, Oleg Shpynov, Aleksei Shpilman

Automatic generation of reviews of scientific papers

ICMLA2020

November 2020
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov

Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome

Nature Aging

Mayo de 2020

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov

Epigenetic aging of classical monocytes from healthy individuals

Preprint en bioRxiv

Junio de 2019
O. Shpynov, A. Dievskii, P. Tsurinov, et al

Bioinformatics Institute 2018/19 project abstracts

San Petersburgo, ISBN 978-5-6043094-2-1

2019
Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich

GENOMIC DATA ACCESS SERVICE

Septiembre de 2018
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov

POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq

Actas del 17th European conference on computational biology

2018 de julio
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov

POSTER: Semi-supervised solution for peak calling

Actas del BiATA2018 Bioinformatics: from algorithms to applications

Mayo de 2018
Jeremy P. Huynh, Chih-Chung Lin, Jacqueline M. Kimmey, Nicholas N. Jarjour, Elizabeth A. Schwarzkopf, Tara R. Bradstreet, Irina Shchukina, Oleg Shpynov, Casey T. Weaver, Reshma Taneja, Maxim N. Artyomov, Brian T. Edelson, Christina L. Stallings

Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

Journal of Experimental Medicine

Octubre de 2016
Bagaitkar Juhi, Bambouskova Monica, Oltz Eugene, Porter Sofia, Collins Patrick, Shpynov Oleg, German Demidov, Konstantin Zaytsev

POSTER: Systems Level Characterization of the Epigenomic Changes During Healthy Aging in the Human Blood Monocyte

Noviembre de 2014
Evgenii Kurbatckii

POSTER: Detecting differential histone modification sites from ChIP-seq data via ranking

Actas del 14th European conference on computational biology

Noviembre de 2014
Sergei Lebedev, Dmitry Groshev

POSTER: A switching hidden Markov model for bisulfite sequencing

Actas del 14th European conference on computational biology